Accueil du site > Equipes de recherche > Optique et Biologie
Publications
Last update : 19 november 2012
Publications
Submitted
F. Etoc, D. Lisse, Y. Bellaiche, J. Piehler, M. Coppey, M. Dahan, « Nanoparticle-mediated magnetic manipulation of intracellular signaling in living cells » (under review)
C. G. Specht, I. Izeddin, P. C. Rodriguez, M. El Beheiry, P. Rostaing, X. Darzacq, M. Dahan and A. Triller ”Quantitative nanoscopy at inhibitory synapses : counting gephyrin molecules and receptor binding ” (under review)
I. Cisse, I. Izeddin, M. Dahan and X. Darzacq, « Real time dynamics of RNA Polymerase II clustering in live human cells », soumis.
I. Izeddin, V. Récamier, L. Bosanac, I.I. Cissé, L. Boudaren, F. Proux, C. Dugast-Darzacq, O. Bénichou, R. Voituriez, O. Bensaude, M. Dahan, and X. Darzacq, « Distinct target search modes of c-Myc and P-TEFb revealed by single molecule tracking in live cells”, soumis.
J.-B. Masson, P. Dionne, C. Salvatico, M. Renner, C. Specht, A. Triller, and M. Dahan, « Mapping the diffusivity and energy landscapes of the neuronal membranes », soumis.
2012
S. Abrahamsson, J. Chen, B. Hajj, S. Stallinga, A. Katsov, J. Wisniewski, G. Mizuguchi, P. Soulle, F. Mueller, C. Dugast Darzacq, X. Darzacq, C.Wu, C. I. Bargmann, D. A. Agard, M. Dahan and M.G.L. Gustafsson, “Fast multi-color 3D imaging using multi-focus microscopy”, Nature Methods (in press).
M. Morel, V. Shynkar, J.-C. Galas, I. Dupin, C. Bouzigues, V. Studer, M. Dahan, « Amplification and temporal filtering during gradient sensing by nerve growth cônes probed with a microfluidic assay » Biophysical Journal (2012) 103, 1648-1656.
V. Studer, J. Bobin, M. Chahid, H. Moussavi, E. Candes, M. Dahan, « Compressive Fluorescence Microscopy for Biological and hyperspectral imaging » Proc. Natl. Acad. Sci. USA (2012) 109(26):E1679-87
I. Izeddin, M. El Beheiry, J. Andilla, D. Ciepielewski, X. Darzacq, and M. Dahan « PSF shaping with adaptive optics for 3D single-molecule super-resolution imaging and tracking », Opt. Express (2012), 20, 4957-4967.
D. Normanno, M. Dahan, and X. Darzacq, “Intra-nuclear mobility and target search mechanisms of transcription factors : a single-molecule perspective on gene expression and regulation”, Biophysica and Bichemica Acta (2012), 1819, 482–493.
I. Izeddin, M. El Beheiry, J. Andilla, D. Ciepielewski, X. Darzacq, and M. Dahan « PSF shaping with adaptive optics for 3D single-molecule super-resolution imaging and tracking », Opt. Express (2012), 20, 4957-4967.
Dikic J, Menges C, Clarke S, Kokkinidis M, Pingoud A, Wende W, Desbiolles P. "The rotation-coupled sliding of EcoRV". Nucleic Acids Res. 40(9):4064-70 (2012).
M. Morel, J.C. Galas, M. Dahan, V. Studer, « Concentration Landscape Generators for Shear Free Dynamical Chemical Stimulation”, Lab On Chip (2012) 12(7):1340-6.
Izeddin, I ; Boulanger, J ; Racine, V ; Specht, C G ; Kechkar, A ; Nair, D ; Triller, A ; Choquet, D ; Dahan, M ; Sibarita, J B, « Wavelet analysis for single molecule localization microscopy », Opt. Express (2012), 20, 2081-2095
2011
Verpillat F, Joud F, Desbiolles P, Gross M. Dark-field digital holographic microscopy for 3D-tracking of gold nanoparticles. Opt Express. (2011) 19(27):26044-55.
J. E. Sillibourne, C.G. Specht, I. Izeddin, I. Hurbain,, P. Tran , A. Triller,, X. Darzacq, M. Dahan and M. Bornens, « Assessing the localization of centrosomal proteins by PALM/STORM nanoscopy », Cytoskeleton (2011), 68(11):619-27.
W. Bouthour, F. Leroy, C. Emmanuelli, M. Carnaud, M. Dahan, J.-C. Poncer, and S. Lévi « A human mutation in Gabrg2 associated with generalized epilepsy influences the membrane dynamics of GABAA receptors », à paraître dans Cerebral Cortex
Bonnet I, Desbiolles P., "The diffusion constant of a labeled protein sliding along DNA", Eur Phys J E Soft Matter. (2011), 34(3):1-10.
G. Iyer, F. Pinaud, J. Xu, Y. Ebenstein, J. Li, M. Dahan and S. Weiss, « Aromatic Aldehyde and Hydrazine Activated Peptide Coated Quantum Dots for Bioconjugation and Live Cell Imaging » Bioconjug Chem. (2011) 22(6):1006-11.
F. Pinaud, M. Dahan, “Targeting, imaging and post-translational modification of single biomolecules in living cells by complementation activated light microscopy with split fluorescent proteins”, Proc. Natl. Acad. Sci. USA (2011) 108 (24) E201–E210.
S. Clarke, S. Tamang, P. Reiss, M. Dahan, « A simple and general route for (mono)functionalization of fluorescent and magnetic nanoparticles using engineered peptides », Nanotechnology 22, 175103 (2011).
I. Izeddin, C. Specht, M. Leleck, X. Darzacq, A. Triller, C. Zimmer, M. Dahan, « Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe », PLoS ONE 6(1) : e15611 (2011).
I. Izeddin, X. Darzacq, M. Dahan, « Nouvelles microscopies cellulaires à l’échelle de la molécule individuelle », Médecine&Sciences (2011) 27(5):547-552.
2010
Grimm O, Coppey M, Wieschaus E. Modelling the Bicoid gradient. Development. 2010 Jul ;137(14):2253-64
S. Clarke, F. Pinaud, O. Beutel, C. You, J. Piehler, M. Dahan, « Covalent monofunctionalization of peptide-coated semiconductor quantum dots for single molecule assays », Nanolett. 2010, 10 (6) 2147–2154
Kim Y, Coppey M, Grossman R, Ajuria L, Jiménez G, Paroush Z, Shvartsman SY. MAPK substrate competition integrates patterning signals in the Drosophila embryo. Curr Biol. 2010 Mar 9 ;20(5):446-51
Changjiang You, Stephan Wilmes, Yulia Podoplelowa, Sara Löchte, Oliver Beutel, Friedrich Roder, Christian Richter, Thomas Seine, Markus Staufenbiel, Dirk Schaible, Samuel Clarke, Fabien Pinaud, Maxime Dahan, Jacob Piehler, “Self-assembly of monofunctional quantum dots for multiplexed protein tracking in live cells”, Angewandte Chemie, 49, 4108-4112 (2010)
F. Pinaud, S. Clarke, A. Sittner, and M. Dahan, “Probing cellular events, one quantum dot a time”, Nature Methods 7, 275-85 (2010).
C. Bouzigues, D. Holcman, M. Dahan, « A model for the polarity of chemoreceptors at the growth cone membrane during directional sensing”, PLoS One 5(2) : e9243 (2010).
L. Danglot, M. Chaineau, M. Dahan, M.-C. Gendron, N. Boggetto, F. Perez, and T. Galli, “EGF receptor cell surface dynamics is regulated by the vSNARE TI-VAMP”, J. Cell Sci. 123, 723-735 (2010).
Warnasooriya N, Joud F, Bun P, Tessier G, Coppey-Moisan M, Desbiolles P, Atlan M, Abboud M, Gross M., "Imaging gold nanoparticles in living cell environments using heterodyne digital holographic microscopy", Opt Express. 2010 18(4):3264-73.
Atlan M, Desbiolles P, Gross M, Coppey-Moisan M., "Parallel heterodyne detection of dynamic light-scattering spectra from gold nanoparticles diffusing in viscous fluids", Opt Lett. 2010 35(5):787-9.
2009
’’Quantifying Hopping and Jumping in Facilitated Diffusion of DNA-Binding Proteins’’, C. Loverdo, O. Bénichou, R. Voituriez, A. Biebricher, I. Bonnet, and P. Desbiolles, Phys. Rev. Lett. 102, 188101 (2009).
MAPK signaling in equations and embryos. Shvartsman SY, Coppey M, Berezhkovskii AM. Fly (Austin). 2009 Jan-Mar ;3(1):62-7
Signaling gradients in cascades of two-state reaction-diffusion systems. Berezhkovskii AM, Coppey M, Shvartsman SY. Proc Natl Acad Sci U S A. 2009 Jan 27 ;106(4):1087-92
“High-affinity quantum-dot labeling of histidine-tagged proteins for multiplexed targeting and single-molecule tracking in live cells”, V. Roullier, S. Clarke, C. You, F. Pinaud, G. Gouzer, D. Schaible, V. Marchi-Artzner, J. Piehler, M. Dahan, Nanolett. 9, 1228-1234 (2009).
“Velocity, processivity and individual steps of single myosin V molecules in live cells", P. Pierobon, S. Achouri, S. Courty, A. Dunn, J.A. Spudich, M. Dahan and G. Cappello, Biophys. J. 2009 96:4268-75. Selected in Research Highlights.
"Tracking of single quantum dot labeled EcoRV sliding along DNA manipulated by double optical tweezers", Biebricher A, Wende W, Escudé C, Pingoud A, Desbiolles P. Biophys J. 2009 96:L50-2. Selected in Research Highlights.
"Microfluidic stickers for cell- and tissue-based assays in microchannels", M. Morel, D. Bartolo, J.-C. Galas M. Dahan and V. Studer, Lab On Chip (in press).
2008
"Achieving shot-noise-limited sensitivity in single-shot digital holography", M. Atlan, P. Desbiolles, J. Hare, and M. Gross, Opt. Lett. 33, 500 (2008)
’"Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA", I. Bonnet, A. Biebricher, P.-L. Porté, C. Loverdo, O. Bénichou, R. Voituriez, C. Escudé, W. Wende, A. Pingoud and P. Desbiolles, Nucleic Acids Res. 36 4118 (2008).
"Live analysis of endodermal layer formation identifies random walk as a novel gastrulation movement", G. Pézeron, P. Mourrain, S. Courty, J. Ghislain, T. S. Becker, F. M. Rosa and N. B. David, Current Biology, 18, 276-281 (2008).
"Zooming into live cells", Fabien Pinaud and Maxime Dahan, Science 320, 187-188 (2008).
"Interaction between water-soluble peptidic CdSe/ZnS nanocrystals and membranes : formation of hybrid vesicles and condensed lamellar phases", Aurélien Dif, Etienne Henry, Franck Artzner, Michèle Baudy-Floc’h, Marc Schmutz, Maxime Dahan, Valérie Marchi-Artzner, J. Am. Chem. Soc. 130, 8289–8296 (2008).
2007
"Asymmetric redistribution of GABAA receptors during GABA gradient sensing by nerve growth cones analyzed by single QD imaging", C. Bouzigues, M. Morel, A. Triller, M. Dahan, Proc. Natl. Acad. Sci. USA 104, 11251 (2007) PDF
"Imaging the lateral diffusion of membrane molecules with quantum dots", H. Bannai, S. Lévi, C. Schweizer, M. Dahan and A. Triller, Nature Protocols 1, 2628 - 2634 (2007)
"Multiple association states between glycine receptors and gephyrin identified by SPT analysis", M.-V. Ehrensperger, C. Hanus, C. Vannier, A. Triller, M. Dahan, Biophys. J. 92 ; 3706-3718 (2007) PDF
"Transient directed motions of GABAA receptors in growth cones detected by a Speed Correlation Index", C. Bouzigues, M. Dahan, Biophys. J. 92 ; 654-660 (2007) PDF
sélectionné dans Science STKE PDF
2006
"Single quantum dot tracking of membrane proteins", C. Bouzigues, S. Lévi, A. Triller and M. Dahan, "Quantum Dots : Application in Biology" p. 81-92, edited by C.Z. Holtz and M.P. Bruchez, Methods in Molecular Biology Series, Humana Press (2006).
"Water-soluble pegylated Quantum Dots : from a composite hexagonal phase to isolated micelles", F. Boulmedais, P. Bauchat, M. J. Brienne, I. Arnal, F. Artzner, T. Gacoin, M. Dahan, V. Marchi-Artzner, Langmuir 22, 9797 - 9803 (2006).
"Cytoskeleton regulation of glycine receptor number at synapses and diffusion in the plasma membrane", C. Charrier, M.-V. Ehrensperger, M. Dahan, S. Lévi, A. Triller, J. Neurosci. 26, 8502-8511 (2006). PDF
"Tracking individual kinesin motors in living cells using single quantum dot imaging", S. Courty, C. Luccardini, Y. Bellaiche, G. Cappello, M. Dahan, Nanolett. 6, 1491-1495 (2006) PDF
sélectionné dans Nature’s Research Highlights PDF et dans Analytical Chemistry PDF
"Tracking individual proteins in living cells using single quantum dot imaging", S. Courty, C. Bouzigues, C. Luccardini, M.-V. Ehrensperger, S. Bonneau and M. Dahan, Methods in Enzymology 414, 211-228 (2006) PDF
"From analog to digital : exploring cell dynamics with single quantum dots", M. Dahan Robert Fuelgen Lecture, Histochem Cell Biol. 125, 451-456 (2006)
"Size, Charge and Interactions with Giant Lipid Vesicles of Quantum Dots Coated with an Amphiphilic Macromolecule", C. Luccardini, C. Tribet, F. Vial, V. Marchi-Artzner and M. Dahan, Langmuir 22, 2304 - 2310 (2006) PDF
"Single quantum dot imaging in live cells : toward a cellular GPS", S. Courty, M. Zevenbergen, C. Bouzigues, M.-V. Ehrensperger, C. Luccardini, A. Sittner, S. Bonneau, M. Dahan, Proceedings of SPIE "Colloidal Quantum Dots for Biomedical Applications" Editor(s) : Marek Osinski, Kenji Yamamoto, Thomas M. Jovin M.D. , p. 106-112 (2006)
2005
"Emission properties of individual CdSe/ZnS quantum dots close to a dielectric interface", X. Brokmann, L. Coolen, J.P. Hermier, and M. Dahan, Chem. Phys. 318, 91-98 (2005) PDF
"Detection of single DNA molecules by multicolor quantum-dot end-labeling", Aurélien Crut, B. Géron-Landre, I. Bonnet, S. Bonneau, P. Desbiolles, and C. Escudé, Nucl. Acid. Res 33 e98 (2005) PDF
"Des nanosources de lumière pour l’optique et la biologie", X. Brokmann, J.P. Hermier, P. Desbiolles, et M. Dahan (Images de la Physique, 2005) PDF
"Single quantum dot tracking based on perceptual grouping using minimal paths in a spation temporal volume", S. Bonneau, M. Dahan, and L. Cohen, IEEE Transactions in Image Processing 14, 1384-1395 (2005)
"Orientation imaging and tracking of single CdSe nanocrystals by defocused microscopy", X. Brokmann, M. Ehrensperger, J.P. Hermier, A. Triller and M. Dahan, Chem. Phys. Lett. 406, 210-214 (2005) PDF
2004
"Measurement of the radiative and non-radiative decay rates of single CdSe nanocrystals through a controlled modification of their spontaneous emission", X. Brokmann, L. Coolen, M. Dahan and J.P. Hermier, Phys. Rev. Lett. 93, 107403 (2004) PDF
"Colloidal CdSe/ZnS quantum dots as single photon sources", X. Brokmann, G. Messin, P. Desbiolles, E. Giacobino, M. Dahan and J.P. Hermier, New Journal of Physics 6, 99 (2004) PDF
"Imaging Single Receptors with Quantum Dots", S. Lévi, M. Dahan and A. Triller, in "Imaging in Neuroscience and Development : A laboratory manual.", edited by Rafael Yuste and Arthur Konnerth, Cold Spring Harbor Press (2004).
"Highly efficient triggered emission of single photons by colloidal CdSe/ZnS nanocrystals", X. Brokmann, E. Giacobino, M. Dahan and J.P. Hermier, Appl. Phys. Lett. 85, 712 (2004) PDF
"Des nanocristaux pour explorer la dynamique des cellules nerveuses", M. Dahan, S. Lévi, et A. Triller, Universalia 2004, p. 306
"A multiple target approach for single quantum dot tracking", S. Bonneau, L. Cohen, and M.Dahan, Proceedings of the IEEE International Symposium on Biological Imaging (ISBI 2004), p. 664.
2003
"Diffusion dynamics of glycine receptors revealed by single quantum dot tracking", M.Dahan, S. Lévi, C. Luccardini, P. Rostaing, B. Riveau, and A. Triller, Science 302, 442 (2003) PDF
sélectionné par Science Magazine parmi les "Top Stories 2003"
"Transverse fluctuations of single DNA molecules attached at both extremities to a surface", A. Crut, D. Lasne, J.F. Allemand, M. Dahan, P. Desbiolles, Phys. Rev. E 67 051910 (2003) PDF
"Statistical Aging and Non Ergodicity in the Fluorescence of Single Nanocrystals", X. Brokmann, J.P. Hermier, G. Messin, P. Desbiolles, J.P. Bouchaud, M. Dahan, Phys. Rev. Lett. 90, 120601-1 (2003) PDF
"Sequence-specific fluorescent labeling of double-stranded DNA observed at the single molecule level", B. Géron-Landre, T. Roulon, P. Desbiolles, and C. Escudé, Nucl. Acid Res. 31, e125 (2003).
2001
"Bunching and Antibunching in the fluorescence of semiconductor nanocrystals", G. Messin, J.P. Hermier, E. Giacobino, P. Desbiolles, M. Dahan, Optics Letters 26, 1891 (2001) PDF
Previous publications
Dahan M., Laurence T., Pinaud F., Chemla D., Alivisatos A.P., Sauer M., Weiss S., "Time-gated biological imaging using colloïdal quantum dots", Opt. Lett. 26, 825 (2001).
Deniz A., Laurence T., Dahan M., Chemla D., Schultz P., Weiss S., "Ratiometric single-molecule studies of freely diffusing molecules", Annu. Rev. Phys. Chem. 52, 233-53 (2001).
Michalet X., Pinaud F., Lacoste T., Dahan M., Bruchez M., Alivisatos A.P., Weiss S., "Properties of Fluorescent Semiconductor Nanocrystals and their Applications to Biological Labelling", Single Molecule 4, 261-276 (2001).
Deniz A., Laurence T., Beligere G., Dahan M., Martin A., Chemla D., Dawson P., Schultz P., and Weiss S., "Single-molecule protein folding : Diffusion fluorescence resonance energy transfer studies of the denaturation of chymotrypsin inhibitor 2", Proc. Natl. Acad. Sci. USA 97, 5179-5184 (2000). PDF
Deniz A*., Dahan M*., Grunwell J., Ha T., Chemla D., Weiss S., Schultz P. "Single-pair FRET on freely diffusing molecules : observation of Forster distance dependance and subpopulation", Proc. Natl. Acad. Sci. USA 36, 3670 (1999). (* : equal contribution) PDF
Dahan M.*, Deniz A.*, Ha T., Chemla D., Schultz P., Weiss S., "Ratiometric measurement and identification of single diffusing molecules", Chemical Physics 247, 85 (1999). (* : equal contribution).
